appears_in:
- cl
- envo
- foodon
- go
- pco
contact:
  email: frederic.bastian@unil.ch
  github: fbastian
  name: Frederic Bastian
  orcid: 0000-0002-9415-5104
depends_on: []
deprecated: false
description: The taxonomy contains the relationships between all living forms for
  which nucleic acid or protein sequence have been determined.
download_json: http://purl.obolibrary.org/obo/ncbitaxon.json
download_obo: http://purl.obolibrary.org/obo/ncbitaxon.obo
download_owl: http://purl.obolibrary.org/obo/ncbitaxon.owl
example: '2170610'
homepage: https://github.com/obophenotype/ncbitaxon
license: CC0-1.0
mappings:
  aberowl: NCBITAXON
  agroportal: NCBITAXON
  bartoc: '509'
  biocontext: TAXONOMY
  bioportal: NCBITAXON
  cellosaurus: NCBI_TaxID
  edam: '1179'
  fairsharing: FAIRsharing.fj07xj
  go: taxon
  hl7: 2.16.840.1.113883.6.205
  miriam: taxonomy
  n2t: taxonomy
  ncbi: taxon
  obofoundry: ncbitaxon
  ols: ncbitaxon
  ontobee: NCBITaxon
  prefixcommons: taxonomy
  re3data: r3d100010415
  wikidata: P685
name: NCBI Taxonomy
namespace_in_lui: false
pattern: ^\d+$
preferred_prefix: NCBITaxon
prefix: ncbitaxon
providers:
- code: CURATOR_REVIEW
  description: Taxonomy through UniProt PURL
  homepage: https://www.uniprot.org/taxonomy/
  name: Taxonomy through UniProt PURL
  uri_format: https://purl.uniprot.org/taxonomy/$1
- code: CURATOR_REVIEW
  description: Bio2RDF
  homepage: https://bio2rdf.org/
  name: Bio2RDF
  uri_format: https://bio2rdf.org/taxonomy:$1
- code: ebi
  description: European Nucleotide Archive (ENA)
  homepage: https://www.ebi.ac.uk/ena/
  name: European Nucleotide Archive (ENA)
  uri_format: https://www.ebi.ac.uk/ena/data/view/Taxon:$1
- code: scholia
  description: Scholia is a service that creates visual scholarly profiles for topic,
    people, organizations, species, chemicals, etc using bibliographic and other information
    in Wikidata.
  homepage: https://scholia.toolforge.org/
  name: Scholia
  uri_format: https://scholia.toolforge.org/ncbi-taxon/$1
publications:
- doi: 10.1093/database/baaa062
  pmc: PMC7408187
  pubmed: '32761142'
  title: 'NCBI Taxonomy: a comprehensive update on curation, resources and tools.'
  year: 2020
- doi: 10.1093/nar/gkx1094
  pmc: PMC5753231
  pubmed: '29140468'
  title: GenBank.
  year: 2018
- doi: 10.1093/nar/gkr1178
  pmc: PMC3245000
  pubmed: '22139910'
  title: The NCBI Taxonomy database.
  year: 2011
repository: https://github.com/obophenotype/ncbitaxon
synonyms:
- NCBITaxon
- NCBI Taxonomy
- taxid
- taxonomy
- TaxonomyID
- NCBI_taxid
- TAX
- NCBI_Taxon_ID
- uniprot.taxonomy
- taxon
uri_format: https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=$1
version: '2022-08-18'