{"prefix": "so", "name": "Sequence types and features ontology", "description": "The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data.", "pattern": "^\\d{7}$", "uri_format": "http://www.sequenceontology.org/miso/current_release/term/SO:$1", "providers": [], "homepage": "http://www.sequenceontology.org/", "repository": "https://github.com/The-Sequence-Ontology/SO-Ontologies", "contact": {"name": "Karen Eilbeck", "orcid": "0000-0002-0831-6427", "email": "keilbeck@genetics.utah.edu", "github": "keilbeck"}, "example": "0001157", "license": "CC-BY-4.0", "version": "2021-11-22", "download_owl": "http://purl.obolibrary.org/obo/so.owl", "download_obo": "https://github.com/The-Sequence-Ontology/SO-Ontologies/raw/master/Ontology_Files/so.obo", "banana": "SO", "deprecated": false, "mappings": {"aberowl": "SO", "agroportal": "SO", "biocontext": "SO", "bioportal": "SO", "fairsharing": "FAIRsharing.6bc7h9", "go": "SO", "miriam": "so", "n2t": "so", "obofoundry": "so", "ols": "so", "ontobee": "SO", "prefixcommons": "so"}, "synonyms": [], "publications": [{"pubmed": "20796305", "doi": "10.1186/gb-2010-11-8-r88", "pmc": "PMC2945790", "title": "A standard variation file format for human genome sequences.", "year": 2010}, {"pubmed": "20226267", "doi": "10.1016/j.jbi.2010.03.002", "pmc": "PMC3052763", "title": "Evolution of the Sequence Ontology terms and relationships.", "year": 2010}, {"pubmed": "15892872", "doi": "10.1186/gb-2005-6-5-r44", "pmc": "PMC1175956", "title": "The Sequence Ontology: a tool for the unification of genome annotations.", "year": 2005}], "appears_in": [], "depends_on": [], "namespace_in_lui": true, "preferred_prefix": "SO"}