appears_in: []
banana: SO
contact:
  email: keilbeck@genetics.utah.edu
  github: keilbeck
  name: Karen Eilbeck
  orcid: 0000-0002-0831-6427
depends_on: []
deprecated: false
description: The Sequence Ontology (SO) is a structured controlled vocabulary for
  the parts of a genomic annotation. It provides a common set of terms and definitions
  to facilitate the exchange, analysis and management of genomic data.
download_obo: https://github.com/The-Sequence-Ontology/SO-Ontologies/raw/master/Ontology_Files/so.obo
download_owl: http://purl.obolibrary.org/obo/so.owl
example: '0001157'
homepage: http://www.sequenceontology.org/
license: CC-BY-4.0
mappings:
  aberowl: SO
  agroportal: SO
  biocontext: SO
  bioportal: SO
  fairsharing: FAIRsharing.6bc7h9
  go: SO
  miriam: so
  n2t: so
  obofoundry: so
  ols: so
  ontobee: SO
  prefixcommons: so
name: Sequence types and features ontology
namespace_in_lui: true
pattern: ^\d{7}$
preferred_prefix: SO
prefix: so
providers: []
publications:
- doi: 10.1186/gb-2010-11-8-r88
  pmc: PMC2945790
  pubmed: '20796305'
  title: A standard variation file format for human genome sequences.
  year: 2010
- doi: 10.1016/j.jbi.2010.03.002
  pmc: PMC3052763
  pubmed: '20226267'
  title: Evolution of the Sequence Ontology terms and relationships.
  year: 2010
- doi: 10.1186/gb-2005-6-5-r44
  pmc: PMC1175956
  pubmed: '15892872'
  title: 'The Sequence Ontology: a tool for the unification of genome annotations.'
  year: 2005
repository: https://github.com/The-Sequence-Ontology/SO-Ontologies
synonyms: []
uri_format: http://www.sequenceontology.org/miso/current_release/term/SO:$1
version: '2021-11-22'