Citing the Bioregistry
The Bioregistry can be cited with the following:
Hoyt, C. T., et al. (2022) The Unifying the identification of biomedical entities with the Bioregistry. Nature Scientific Data, s41597-022-01807-3
or by using the following LaTeX:
@article{Hoyt2022Bioregistry,
author = {Hoyt, Charles Tapley and Balk, Meghan and Callahan, Tiffany J and Domingo-Fern{\'{a}}ndez, Daniel and Haendel, Melissa A and Hegde, Harshad B and Himmelstein, Daniel S and Karis, Klas and Kunze, John and Lubiana, Tiago and Matentzoglu, Nicolas and McMurry, Julie and Moxon, Sierra and Mungall, Christopher J and Rutz, Adriano and Unni, Deepak R and Willighagen, Egon and Winston, Donald and Gyori, Benjamin M},
doi = {10.1038/s41597-022-01807-3},
issn = {2052-4463},
journal = {Sci. Data},
number = {1},
pages = {714},
title = {Unifying the identification of biomedical entities with the Bioregistry},
url = {https://doi.org/10.1038/s41597-022-01807-3},
volume = {9},
year = {2022}
}Bioregistry Badge
If you use the Bioregistry in your code, support us by including our badge in your project's README.md:
[](https://github.com/biopragmatics/bioregistry)
If you've got README.rst, use this instead:
.. image:: https://img.shields.io/static/v1?label=Powered%20by&message=Bioregistry&color=BA274A&style=flat&logo=image/png;base64,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
:target: https://github.com/biopragmatics/bioregistry
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</a>
It looks like this
External Resource Acknowledgements
This contains special notes for some external registries used as data sources in the Bioregistry, when applicable. The remaining information about each data source ingested in the Bioregistry can be found directly on the registry pages.
AberOWL
This resource was ingested with the following code available on GitHub. ⚠️ Data from this resource does not have an explicit license. See https://github.com/biopragmatics/bioregistry/issues/339.
AgroPortal
⚠️ Data from this resource does not have an explicit license. See https://github.com/biopragmatics/bioregistry/issues/336.
Basic Register of Thesauri, Ontologies & Classifications
This resource was ingested with the following code available on GitHub. Data from this resource is redistributed under the PDDL 1.0 license.
BioContext
This resource was ingested with the following code available on GitHub. Licensing information could not be located for this resource.
BioPortal Prefixes
This resource was ingested with the following code available on GitHub. ⚠️ Data from this resource does not have an explicit license. See https://github.com/biopragmatics/bioregistry/issues/337.
Biolink Model Registry
This resource was ingested with the following code available on GitHub. Data from this resource is redistributed under the Apache 2.0 license.
Bioregistry
Data from this resource is redistributed under the CC0 license.
Cellosaurus Registry
This resource was ingested with the following code available on GitHub. Data from this resource is redistributed under the CC BY 4.0 license.
Chemical Information Ontology
This resource was ingested with the following code available on GitHub. Data from this resource is redistributed under the CC BY 3.0 license.
Crop Ontology Curation Tool
This resource was ingested with the following code available on GitHub. Data from this resource is redistributed under the CC BY 4.0 license.
EDAM Ontology
This resource was ingested with the following code available on GitHub. Data from this resource is redistributed under the CC BY-SA 4.0 license.
EcoPortal
⚠️ Data from this resource does not have an explicit license. See https://github.com/biopragmatics/bioregistry/issues/338.
FAIRSharing
This resource was ingested with the following code available on
GitHub.
Data from this resource is redistributed under the CC BY-SA 4.0 license.
Gene Ontology Registry
This resource was ingested with the following code available on GitHub. Data from this resource is redistributed under the CC BY 4.0 license.
HL7 External Code Systems
⚠️ Data from this resource does not have an explicit license. See https://github.com/biopragmatics/bioregistry/issues/586.
Identifiers.org
This resource was ingested with the following code available on
GitHub.
Data from this resource is redistributed under the CC BY 4.0 license.
Name-to-Thing
This resource was ingested with the following code available on
GitHub.
Data from this resource is redistributed under the CC0 license.
National Center for Biotechnology Information Registry
This resource was ingested with the following code available on GitHub. ⚠️ Data from this resource does not have an explicit license. See https://github.com/biopragmatics/bioregistry/issues/342.
OBO Foundry
This resource was ingested with the following code available on
GitHub.
Data from this resource is redistributed under the CC0 license.
OntoBee
This resource was ingested with the following code available on GitHub. ⚠️ Data from this resource does not have an explicit license. See https://github.com/biopragmatics/bioregistry/issues/341.
Ontology Lookup Service
This resource was ingested with the following code available on
GitHub.
⚠️ Data from this resource does not have an explicit license. See https://github.com/biopragmatics/bioregistry/issues/340.
Prefix Commons
This resource was ingested with the following code available on GitHub. Data from this resource is redistributed under the Public Domain license.
Prefix.cc
Data from this resource is redistributed under the CC0 license.
Registry of Research Data Repositories
This resource was ingested with the following code available on GitHub. Data from this resource is redistributed under the CC0 license.
UniProt Cross-ref database
This resource was ingested with the following code available on GitHub. Data from this resource is redistributed under the CC BY 4.0 license.
Wikidata Property
This resource was ingested with the following code available on
GitHub.
Data from this resource is redistributed under the CC0 license.