MIRA Epi Metaregistry - Online Mendelian Inheritance in Man

Registry Online Mendelian Inheritance in Man

Online Mendelian Inheritance in Man is a catalog of human genes and genetic disorders.

Prefix

omim

Preferred Prefix

omim

Alternative Prefixes

mim OMIM

Links

Homepage

Contact

Ada Hamosh 0000-0002-1780-5230 ahamosh

Pattern for Local Unique Identifiers

Local identifiers in Online Mendelian Inheritance in Man should match this regular expression:
^\d+$

Example Local Unique Identifier

603903 Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Online Mendelian Inheritance in Man should match this regular expression:
^omim:\d+$

Example CURIE

omim:603903

Publications

References

GitHub Issue https://github.com/biopragmatics/bioregistry/issues/497

Metaregistry Online Mendelian Inheritance in Man

The metaregistry provides mappings between the Bioregistry and other registries. There are 13 mappings to external registries for omim with 7 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`OMIM`
BioContext	`biocontext`	`OMIM`
BioPortal Prefixes	`bioportal`	`OMIM`
EDAM Ontology	`edam`	`1153`
FAIRSharing	`fairsharing`	`FAIRsharing.b084yh`
Gene Ontology Registry	`go`	`OMIM`
HL7 External Code Systems	`hl7`	`2.16.840.1.113883.6.174`
Identifiers.org	`miriam`	`mim`
Name-to-Thing	`n2t`	`mim`
National Center for Biotechnology Information Registry	`ncbi`	`MIM`
Prefix Commons	`prefixcommons`	`omim`
UniProt Cross-ref database	`uniprot`	`DB-0062`
Wikidata Property	`wikidata`	`P492`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE omim:603903 is used to demonstrate the provides available for omim. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
Online Mendelian Inheritance in Man	`omim`	https://omim.org/MIM:603903
Bioregistry	`bioregistry`	https://bioregistry.io/omim:603903
Identifiers.org	`miriam`	https://identifiers.org/mim:603903
Name-to-Thing	`n2t`	https://n2t.net/mim:603903
None	`CURATOR_REVIEW`	http://mirror.omim.org/entry/603903
None	`legacy`	https://www.omim.org/entry/603903
None	`ncbi.omim`	http://www.ncbi.nlm.nih.gov/omim/603903
None	`purl`	https://purl.org/mim/MIM:603903
None	`purl2`	https://omim.org/OMIM:603903

Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code	Name	URL
`CURATOR_REVIEW`	OMIM mirror at John Hopkins	http://mirror.omim.org/entry/603903
`legacy`	OMIM	https://www.omim.org/entry/603903
`ncbi.omim`	NCBI	http://www.ncbi.nlm.nih.gov/omim/603903
`purl`	OMIM PURL (not in use)	https://purl.org/mim/MIM:603903
`purl2`	OMIM PURL (not in use)	https://omim.org/OMIM:603903

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("mim")
'omim'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("omim")
{'mim', 'OMIM'}

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("omim")
'https://omim.org/'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("omim")
'Ada Hamosh'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("omim")
'ahamosh@jhmi.edu'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("omim")
'ahamosh'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("omim")
'0000-0002-1780-5230'