MIRA Epi Metaregistry - The Virus Infectious Disease Ontology

Registry The Virus Infectious Disease Ontology

The Virus Infectious Disease Ontology (IDO Virus) is an extension of the Infectious Disease Ontology (IDO). IDO Virus follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used by Virologists, i.e. virus, prion, satellite, viroid, etc.

Prefix: vido
Preferred Prefix: vido
Version: 2020-08-25
Links: Homepage Repository OWL
Contact: John Beverly 0000-0002-1118-1738 johnbeve
Pattern for Local Unique Identifiers: Local identifiers in The Virus Infectious Disease Ontology should match this regular expression:
^\d{7}$
Example Local Unique Identifier: 0001114 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from The Virus Infectious Disease Ontology should match this regular expression:
^vido:\d{7}$
Example CURIE: vido:0001114

Metaregistry The Virus Infectious Disease Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for vido with 1 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`VIDO`
BioPortal Prefixes	`bioportal`	`VIDO`
Ontology Lookup Service	`ols`	`vido`
OntoBee	`ontobee`	`VIDO`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE vido:0001114 is used to demonstrate the provides available for vido. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
The Virus Infectious Disease Ontology	`vido`	http://purl.obolibrary.org/obo/VIDO_0001114
Bioregistry	`bioregistry`	https://bioregistry.io/vido:0001114
None	`obo.1`	http://purl.obolibrary.org/VIDO_0001114

Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code	Name	URL
`obo.1`	Nonstandard OBO PURL	http://purl.obolibrary.org/VIDO_0001114

Get the version:

>>> import bioregistry as br
>>> br.get_version("vido")
'2020-08-25'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("vido")
'https://github.com/infectious-disease-ontology-extensions/ido-virus'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("vido")
'https://github.com/infectious-disease-ontology-extensions/ido-virus'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("vido")
'https://raw.githubusercontent.com/infectious-disease-ontology-extensions/ido-virus/master/ontology/vido.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("vido")
'John Beverly'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("vido")
'johnbeverley2021@u.northwestern.edu'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("vido")
'johnbeve'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("vido")
'0000-0002-1118-1738'