Bioregistry Schema

Bioregistry JSON Schema

This section describes the JSON schema used Bioregistry. It can be accessed here.

Bioregistry RDF Schema

This section describes the schema elements used in the RDF dumps of the Bioregistry used with prefix bioregistry.schema and URL https://bioregistry.io/schema/#. It can be downloaded here.

Bioregistry schema diagram

C Resource

bioregistry.schema:0000001

A type for entries in the Bioregistry's registry.

C Registry

bioregistry.schema:0000002

A type for entries in the Bioregistry's metaregistry.

C Collection

bioregistry.schema:0000003

A type for entries in the Bioregistry's collections

P has example

bioregistry.schema:0000005

An identifier for a resource or metaresource.

P has provider formatter

bioregistry.schema:0000006

The URL format for a provider that contains $1 for the identifier (or metaidentifier) that should be resolved.

P has resolver formatter

bioregistry.schema:0000007

The URL format for a resolver that contains $1 for the prefix and $2 for the identifier that should be resolved.

P has pattern

bioregistry.schema:0000008

The pattern for identifiers in the given resource

P has download URL

bioregistry.schema:0000010

A download link for the given resource

P provides for

bioregistry.schema:0000011

For resources that do not create their own controlled vocabulary, this relation should be used to point to a different resource that it uses. For example, CTD's gene resource provides for the NCBI Entrez Gene resource.

P is deprecated

bioregistry.schema:0000012

A property whose subject is a resource that denotes if it is still available and usable? Currently this is a blanket term for decommissioned, unable to locate, abandoned, etc.