Registry NCBI Taxonomy
The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined.
- Prefix
ncbitaxon- Preferred Prefix
NCBITaxon- Alternative Prefixes
- NCBI Taxonomy taxon uniprot.taxonomy TaxonomyID taxid NCBITaxon TAX NCBI_taxid NCBI_Taxon_ID taxonomy
- Version
- 2022-08-18
- License
- CC0-1.0
- Links
- Homepage Repository OBO OWL OBO JSON
- Contact
- Frederic Bastian 0000-0002-9415-5104 fbastian
- Pattern for Local Unique Identifiers
-
Local identifiers in NCBI Taxonomy should match this regular expression:
^\d+$ - Example Local Unique Identifier
- 2170610 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from NCBI Taxonomy should match this regular expression:
^ncbitaxon:\d+$ - Example CURIE
- ncbitaxon:2170610
- Publications
Metaregistry NCBI Taxonomy
The metaregistry provides mappings between the Bioregistry and other registries. There are
19 mappings to external registries for ncbitaxon with
10 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| AberOWL | aberowl |
NCBITAXON
|
|
| AgroPortal | agroportal |
NCBITAXON
|
|
| Basic Register of Thesauri, Ontologies & Classifications | bartoc |
509
|
|
| BioContext | biocontext |
TAXONOMY
|
|
| BioPortal Prefixes | bioportal |
NCBITAXON
|
|
| Cellosaurus Registry | cellosaurus |
NCBI_TaxID
|
|
| EDAM Ontology | edam |
1179
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.fj07xj
|
|
| Gene Ontology Registry | go |
taxon
|
|
| HL7 External Code Systems | hl7 |
2.16.840.1.113883.6.205
|
|
Identifiers.org
|
miriam |
taxonomy
|
|
Name-to-Thing
|
n2t |
taxonomy
|
|
| National Center for Biotechnology Information Registry | ncbi |
taxon
|
|
OBO Foundry
|
obofoundry |
ncbitaxon
|
|
Ontology Lookup Service
|
ols |
ncbitaxon
|
|
| OntoBee | ontobee |
NCBITaxon
|
|
| Prefix Commons | prefixcommons |
taxonomy
|
|
| Registry of Research Data Repositories | re3data |
r3d100010415
|
|
Wikidata Property
|
wikidata |
P685
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
ncbitaxon:2170610
is used to demonstrate the provides available for
ncbitaxon. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| NCBI Taxonomy | ncbitaxon |
https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=2170610 |
| Bioregistry | bioregistry |
https://bioregistry.io/ncbitaxon:2170610 |
| Identifiers.org | miriam |
https://identifiers.org/taxonomy:2170610 |
| Name-to-Thing | n2t |
https://n2t.net/taxonomy:2170610 |
| None | scholia |
https://scholia.toolforge.org/ncbi-taxon/2170610 |
| None | CURATOR_REVIEW |
https://purl.uniprot.org/taxonomy/2170610 |
| None | CURATOR_REVIEW |
https://bio2rdf.org/taxonomy:2170610 |
| None | ebi |
https://www.ebi.ac.uk/ena/data/view/Taxon:2170610 |
| None | scholia |
https://scholia.toolforge.org/ncbi-taxon/2170610 |
Extra Providers
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
CURATOR_REVIEW |
Taxonomy through UniProt PURL | https://purl.uniprot.org/taxonomy/2170610 |
CURATOR_REVIEW |
Bio2RDF | https://bio2rdf.org/taxonomy:2170610 |
ebi |
European Nucleotide Archive (ENA) | https://www.ebi.ac.uk/ena/data/view/Taxon:2170610 |
scholia |
Scholia | https://scholia.toolforge.org/ncbi-taxon/2170610 |