Registry Pathogen Transmission Ontology
The Pathogen Transmission Ontology describes the tranmission methods of human disease pathogens describing how a pathogen is transmitted from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles.
- Prefix
trans- Preferred Prefix
TRANS- Version
- 2020-08-04
- License
- CC0-1.0
- Links
- Homepage Repository OBO OWL
- Contact
- Lynn Schriml 0000-0001-8910-9851 lschriml
- Pattern for Local Unique Identifiers
-
Local identifiers in Pathogen Transmission Ontology should match this regular expression:
^\d{7}$ - Example Local Unique Identifier
- 0000024 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Pathogen Transmission Ontology should match this regular expression:
^trans:\d{7}$ - Example CURIE
- trans:0000024
- Publications
Metaregistry Pathogen Transmission Ontology
The metaregistry provides mappings between the Bioregistry and other registries. There are
8 mappings to external registries for trans with
3 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| AberOWL | aberowl |
TRANS
|
|
| BioContext | biocontext |
TRANS
|
|
| BioPortal Prefixes | bioportal |
TRANS
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.nygmp7
|
|
OBO Foundry
|
obofoundry |
trans
|
|
Ontology Lookup Service
|
ols |
trans
|
|
| OntoBee | ontobee |
TRANS
|
|
| Prefix Commons | prefixcommons |
pt
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
trans:0000024
is used to demonstrate the provides available for
trans. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| Pathogen Transmission Ontology | trans |
http://purl.obolibrary.org/obo/TRANS_0000024 |
| Bioregistry | bioregistry |
https://bioregistry.io/trans:0000024 |